Fixbug: output of annovar

workflow.wdl

@@ -250,7 +250,6 @@ workflow {{ project_name }} {
 
     call annovar.annovar as TNseq_annovar {
       input:
-      sample=sample_id,
       vcf=TNseq.TNseq_vcf,
       hg=hg,
       database=database,
@@ -288,7 +287,6 @@ workflow {{ project_name }} {
     
     call annovar.annovar as TNscope_annovar {
       input:
-      sample=sample_id,
       vcf=TNscope.TNscope_vcf,
       hg=hg,
       database=database,
@@ -339,8 +337,7 @@ workflow {{ project_name }} {
     }
 
     call annovar.annovar as VarScan_annovar {
-      input: 
-      sample=sample_id,
+      input:
       vcf=somaticFilter.varscan_somatic_filter,
       hg=hg,
       database=database,