YaqingLiu 4 лет назад
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      README.md

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### Variant Calling
This APP developed for germline and somatic short variant discovery (SNVs + Indels).

**Supported callers**
**Supported Callers**

* All callers are **not activated by default**, which means the default setting is `false`.
* You need to manually set the caller to `true` in the submitted sample.csv.
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* VarScan
* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated)

**Accepted data**
**Accepted Data**
* TN matched WES for somatic variant calling
* TN matched WGS for somatic variant calling
* Normal-only WES for germline variant calling

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