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@@ -1,24 +1,22 @@ |
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### Variant Calling |
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This APP developed for germline and somatic short variant discovery (SNVs + Indels). |
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***Supported callers*** |
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**Supported callers** |
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All callers are **not activated by default**, which means the default setting is `false`. |
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* All callers are **not activated by default**, which means the default setting is `false`. |
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* You need to manually set the caller to `true` in the submitted sample.csv. |
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* The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`. |
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You need to manually set the caller to `true` in the submitted sample.csv. |
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The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`. |
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**Germline** |
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***Germline*** |
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* Haplotyper |
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**Somatic** |
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***Somatic*** |
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* TNseq (TNhaplotyper2) |
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* TNscope |
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* VarScan |
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* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) |
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***Accepted data*** |
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**Accepted data** |
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* TN matched WES for somatic variant calling |
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* TN matched WGS for somatic variant calling |
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* Normal-only WES for germline variant calling |