Update: replaceRG

tasks/replaceRG.wdl

@@ -11,7 +11,7 @@ task replaceRG {
 
   command <<<
     SAMTOOLS_DIR="/opt/samtools/samtools-1.13"
-    $SAMTOOLS_DIR/samtools addreplacerg -r "@RG\tID:${group}\tSM:${sample}\tPL:${pl}" -o ${bam_name}.bam ${bam}
+    $SAMTOOLS_DIR/samtools addreplacerg -w -r "@RG\tID:${group}\tSM:${sample}\tPL:${pl}" -o ${bam_name}.bam ${bam}
     $SAMTOOLS_DIR/samtools index ${bam_name}.bam
   >>>