@@ -1,5 +1,5 @@ | |||
task pindel { | |||
String sample_id | |||
File bam | |||
File bam_index | |||
@@ -7,7 +7,7 @@ task pindel { | |||
String fasta | |||
String docker | |||
String cluster | |||
String cluster_config | |||
String disk_size | |||
command <<< | |||
@@ -65,7 +65,7 @@ task pindel { | |||
runtime { | |||
docker: docker | |||
cluster: cluster | |||
cluster: cluster_config | |||
systemDisk: "cloud_ssd 40" | |||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||
} |