task pindel { | task pindel { | ||||
String sample_id | String sample_id | ||||
File bam | File bam | ||||
File bam_index | File bam_index | ||||
String fasta | String fasta | ||||
String docker | String docker | ||||
String cluster | |||||
String cluster_config | |||||
String disk_size | String disk_size | ||||
command <<< | command <<< | ||||
runtime { | runtime { | ||||
docker: docker | docker: docker | ||||
cluster: cluster | |||||
cluster: cluster_config | |||||
systemDisk: "cloud_ssd 40" | systemDisk: "cloud_ssd 40" | ||||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | ||||
} | } |