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Fixbug: pindel task name

master
YaqingLiu 3 년 전
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cd5f5ba56b
2개의 변경된 파일4개의 추가작업 그리고 4개의 파일을 삭제
  1. +1
    -1
      tasks/pindel.wdl
  2. +3
    -3
      workflow.wdl

+ 1
- 1
tasks/pindel.wdl 파일 보기

@@ -1,4 +1,4 @@
task pindel {
task Pindel {

String sample_id
File bam

+ 3
- 3
workflow.wdl 파일 보기

@@ -10,7 +10,7 @@ import "./tasks/somatic.wdl" as somatic
import "./tasks/processSomatic.wdl" as processSomatic
import "./tasks/somaticFilter.wdl" as somaticFilter
import "./tasks/replaceRG.wdl" as replaceRG
import "./tasks/pindel.wdl" as pindel
import "./tasks/Pindel.wdl" as Pindel
import "./tasks/ANNOVAR.wdl" as ANNOVAR
import "./tasks/VEP.wdl" as VEP

@@ -247,7 +247,7 @@ workflow {{ project_name }} {
}
if (pindel) {
call pindel.pindel as pindel {
call Pindel.Pindel as Pindel {
input:
sample_id=sample_id + '.N',
bam=normal_BQSR.recaled_bam,
@@ -537,7 +537,7 @@ workflow {{ project_name }} {
}

if (pindel) {
call pindel.pindel as pindel_fb {
call Pindel.Pindel as Pindel_fb {
input:
sample_id=sample_id + '.N',
bam=normal_BQSR_fb.recaled_bam,

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