1 changed files with 2 additions and 2 deletions
+ 2
- 2
workflow.wdl
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| call replaceRG.replaceRG as tumor_replaceRG { | call replaceRG.replaceRG as tumor_replaceRG { | ||||
| input: | input: | ||||
| bam=tumor_deduped_bam, | bam=tumor_deduped_bam, | ||||
| group=group_id + '.T', | |||||
| group=sample_id + '.T', | |||||
| sample=sample_id + '.T', | sample=sample_id + '.T', | ||||
| pl=pl, | pl=pl, | ||||
| docker=samtools_docker, | docker=samtools_docker, | ||||
| call replaceRG.replaceRG as normal_replaceRG { | call replaceRG.replaceRG as normal_replaceRG { | ||||
| input: | input: | ||||
| bam=normal_deduped_bam, | bam=normal_deduped_bam, | ||||
| group=group_id + '.N', | |||||
| group=sample_id + '.N', | |||||
| sample=sample_id + '.N', | sample=sample_id + '.N', | ||||
| pl=pl, | pl=pl, | ||||
| docker=samtools_docker, | docker=samtools_docker, |
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