@@ -53,7 +53,7 @@ task TNseq { | |||
${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt -r ${ref_dir}/${fasta} \ | |||
$INPUT $INTERVAL \ | |||
--algo TNhaplotyper2 $SAMPLE\ | |||
--algo TNhaplotyper2 $SAMPLE \ | |||
--germline_vcf ${germline_resource} \ | |||
$PON \ | |||
${sample}.TNseq.$typ.vcf \ |