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Fixbug: output of annovar

tags/v0.1.3
YaqingLiu 4 years ago
parent
commit
a2064698dc
1 changed files with 2 additions and 3 deletions
  1. +2
    -3
      tasks/annovar.wdl

+ 2
- 3
tasks/annovar.wdl View File

@@ -1,6 +1,5 @@
task annovar {

String sample
File vcf
String annotated_vcf = basename(vcf,".vcf")
String hg
@@ -26,7 +25,7 @@ task annovar {

output {
File avinput = "${annotated_vcf}.avinput"
File multianno_txt = "${annotated_vcf}.multianno.txt"
File multianno = "${annotated_vcf}.multianno.vcf"
File multianno_txt = "${annotated_vcf}.${hg}_multianno.txt"
File multianno = "${annotated_vcf}.${hg}_multianno.vcf"
}
}

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