task annovar { | task annovar { | ||||
String sample | |||||
File vcf | File vcf | ||||
String annotated_vcf = basename(vcf,".vcf") | String annotated_vcf = basename(vcf,".vcf") | ||||
String hg | String hg | ||||
output { | output { | ||||
File avinput = "${annotated_vcf}.avinput" | File avinput = "${annotated_vcf}.avinput" | ||||
File multianno_txt = "${annotated_vcf}.multianno.txt" | |||||
File multianno = "${annotated_vcf}.multianno.vcf" | |||||
File multianno_txt = "${annotated_vcf}.${hg}_multianno.txt" | |||||
File multianno = "${annotated_vcf}.${hg}_multianno.vcf" | |||||
} | } | ||||
} | } |