1 changed files with 2 additions and 2 deletions
+ 2
- 2
workflow.wdl
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| if (vep) { | if (vep) { | ||||
| call VEP.VEP as VarScan_VEP { | call VEP.VEP as VarScan_VEP { | ||||
| input: | input: | ||||
| vcf=VarScan.VarScan_vcf, | |||||
| vcf=somaticFilter.varscan_somatic_filter, | |||||
| hg=hg, | hg=hg, | ||||
| only_pass=only_pass, | only_pass=only_pass, | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| if (vep) { | if (vep) { | ||||
| call VEP.VEP as VarScan_VEP_fb { | call VEP.VEP as VarScan_VEP_fb { | ||||
| input: | input: | ||||
| vcf=VarScan_fb.VarScan_vcf, | |||||
| vcf=somaticFilter_fb.varscan_somatic_filter, | |||||
| hg=hg, | hg=hg, | ||||
| only_pass=only_pass, | only_pass=only_pass, | ||||
| sample_id=sample_id, | sample_id=sample_id, |
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