@@ -416,7 +416,7 @@ workflow {{ project_name }} { | |||
if (vep) { | |||
call VEP.VEP as VarScan_VEP { | |||
input: | |||
vcf=VarScan.VarScan_vcf, | |||
vcf=somaticFilter.varscan_somatic_filter, | |||
hg=hg, | |||
only_pass=only_pass, | |||
sample_id=sample_id, | |||
@@ -671,7 +671,7 @@ workflow {{ project_name }} { | |||
if (vep) { | |||
call VEP.VEP as VarScan_VEP_fb { | |||
input: | |||
vcf=VarScan_fb.VarScan_vcf, | |||
vcf=somaticFilter_fb.varscan_somatic_filter, | |||
hg=hg, | |||
only_pass=only_pass, | |||
sample_id=sample_id, |