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defaults
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| "disk_size": "200", | "disk_size": "200", | ||||
| "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | ||||
| "haplotyper": false, | "haplotyper": false, | ||||
| "pindel": false, | |||||
| "tnseq": false, | "tnseq": false, | ||||
| "tnscope": false, | "tnscope": false, | ||||
| "varscan": false, | "varscan": false, |
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inputs
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| "{{ project_name }}.disk_size": "{{ disk_size }}", | "{{ project_name }}.disk_size": "{{ disk_size }}", | ||||
| "{{ project_name }}.cluster_config": "{{ cluster_config }}", | "{{ project_name }}.cluster_config": "{{ cluster_config }}", | ||||
| "{{ project_name }}.haplotyper": {{ haplotyper | tojson }}, | "{{ project_name }}.haplotyper": {{ haplotyper | tojson }}, | ||||
| "{{ project_name }}.pindel": {{ pindel | tojson }}, | |||||
| "{{ project_name }}.tnseq": {{ tnseq | tojson }}, | "{{ project_name }}.tnseq": {{ tnseq | tojson }}, | ||||
| "{{ project_name }}.tnscope": {{ tnscope | tojson }}, | "{{ project_name }}.tnscope": {{ tnscope | tojson }}, | ||||
| "{{ project_name }}.varscan": {{ varscan | tojson }}, | "{{ project_name }}.varscan": {{ varscan | tojson }}, |
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workflow.wdl
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| String cluster_config | String cluster_config | ||||
| Boolean haplotyper | Boolean haplotyper | ||||
| Boolean pindel | |||||
| Boolean tnseq | Boolean tnseq | ||||
| Boolean tnscope | Boolean tnscope | ||||
| Boolean varscan | Boolean varscan |
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