Fixbug: add pindel Boolean

defaults

@@ -35,6 +35,7 @@
   "disk_size": "200",
   "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
   "haplotyper": false,
+  "pindel": false,
   "tnseq": false,
   "tnscope": false,
   "varscan": false,

inputs

@@ -36,6 +36,7 @@
   "{{ project_name }}.disk_size": "{{ disk_size }}",
   "{{ project_name }}.cluster_config": "{{ cluster_config }}",
   "{{ project_name }}.haplotyper": {{ haplotyper | tojson }},
+  "{{ project_name }}.pindel": {{ pindel | tojson }},
   "{{ project_name }}.tnseq": {{ tnseq | tojson }},
   "{{ project_name }}.tnscope": {{ tnscope | tojson }},
   "{{ project_name }}.varscan": {{ varscan | tojson }},

workflow.wdl

@@ -63,6 +63,7 @@ workflow {{ project_name }} {
   String cluster_config
 
   Boolean haplotyper
+  Boolean pindel
   Boolean tnseq
   Boolean tnscope
   Boolean varscan