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tags/v0.1.2
YaqingLiu 4 年前
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This APP developed for somatic short variant discovery (SNVs + Indels).

**Supported callers**

***Supported callers***
* TNhaplotyper2
* TNscope
* VarScan
* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated)
Variant caller can be selected by setting `ture/false` in the submitted sample.csv.

**Types of data that can be received**
***Accepted data***
* TN matched WES
* WGS
The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs).


#### New version
* The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
* The `corealigner` step has been removed.

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