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LUYAO REN
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README.md
高置信位点整合Part2——从VCF和BAM文件中提取突变位点的信息
Author： Run Luyao
E-mail：18110700050@fudan.edu.cn
Git: http://choppy.3steps.cn/renluyao/HCC_Extract_Info.git
Last Updates: 11/9/2019
安装指南
# 激活choppy环境
source activate choppy
# 安装app
choppy install renluyao/HCC_Extract_Info
App概述
当我们拿到测序结果的时候，没有办法判断哪些是真的突变位点，哪些是假阳性
流程与参数
两个问题：
- MNP
- merge之后的pos相同，但是ref和alt不同
是不是gatk的问题，尝试用bcftools norm