@@ -103,7 +103,7 @@ Hard filtration is applied, for GATK do not yet have the RNAseq training/truth r | |||
# GATK3, if you are using gatk4, please pay attention to the new arguments | |||
java -jar GenomeAnalysisTK.jar -T VariantFiltration -R hg_19.fasta -V input.vcf -window 35 -cluster 3 -filterName FS -filter "FS > 30.0" -filterName QD -filter "QD < 2.0" -o output.vcf | |||
``` | |||
**one sample running time** | |||
**Per sample running time** | |||
Less than 4 hours | |||