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LUYAO REN hace 6 años
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@@ -103,7 +103,7 @@ Hard filtration is applied, for GATK do not yet have the RNAseq training/truth r
# GATK3, if you are using gatk4, please pay attention to the new arguments
java -jar GenomeAnalysisTK.jar -T VariantFiltration -R hg_19.fasta -V input.vcf -window 35 -cluster 3 -filterName FS -filter "FS > 30.0" -filterName QD -filter "QD < 2.0" -o output.vcf
```
**one sample running time**
**Per sample running time**

Less than 4 hours


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