LUYAO REN
5 years ago
2 changed files with 2 additions and 2 deletions
+ 1
- 1
inputs
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| "{{ project_name }}.input_file": "{{ input_file }}", | "{{ project_name }}.input_file": "{{ input_file }}", | ||||
| "{{ project_name }}.fastq_dir": "{{ fastq_dir }}", | "{{ project_name }}.fastq_dir": "{{ fastq_dir }}", | ||||
| "{{ project_name }}.disk_size": "100", | "{{ project_name }}.disk_size": "100", | ||||
| "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc" | |||||
| "{{ project_name }}.cluster_config": "OnDemand bcs.es.c.8xlarge img-ubuntu-vpc" | |||||
| } | } |
+ 1
- 1
tasks/NGScheckMates.wdl
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| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt | |||||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -s 0.5 | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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