cluster config

inputs

@@ -3,5 +3,5 @@
   "{{ project_name }}.input_file": "{{ input_file }}",
   "{{ project_name }}.fastq_dir": "{{ fastq_dir }}",
   "{{ project_name }}.disk_size": "100",
-  "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc"
+  "{{ project_name }}.cluster_config": "OnDemand bcs.es.c.8xlarge img-ubuntu-vpc"
 }

tasks/NGScheckMates.wdl

@@ -10,7 +10,7 @@ task NGScheckMates {
 		set -e
 		nt=$(nproc)
 		export NCM_HOME=/opt/NGSCheckMate
-		python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt
+		python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -s 0.5
 	>>>
 
 	runtime {