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LUYAO REN 6 年前
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共有 1 个文件被更改,包括 1 次插入1 次删除
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      tasks/Freebayes.wdl

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tasks/Freebayes.wdl 查看文件

@@ -15,7 +15,7 @@ task Freebayes {
set -o pipefail
set -e
nt=$(nproc)
freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf
/opt/freebayes/scripts/freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf
>>>

runtime {

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