file location

tasks/Freebayes.wdl

@@ -15,7 +15,7 @@ task Freebayes {
 		set -o pipefail
 		set -e	
 		nt=$(nproc)
-		freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf
+		/opt/freebayes/scripts/freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf
 	>>>
 
 	runtime {