LUYAO REN
6 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/Freebayes.wdl
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| @@ -15,7 +15,7 @@ task Freebayes { | |||
| set -o pipefail | |||
| set -e | |||
| nt=$(nproc) | |||
| freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf | |||
| /opt/freebayes/scripts/freebayes-parallel <(/opt/freebayes/scripts/fasta_generate_regions.py ${ref_dir}/${ref_fa_fai} 100) $nt -f ${ref_dir}/${fasta} --genotype-qualities ${Dedup_bam} > ${sample}_fb.vcf | |||
| >>> | |||
| runtime { | |||
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