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tasks/manta.wdl
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| @@ -15,6 +15,7 @@ task manta_calling{ | |||
| String out_dir = "${sample_id}_result" | |||
| command <<< | |||
| set -exo pipefail | |||
| cpu=$(nproc) | |||
| /home/biosoft/manta-1.6.0.centos6_x86_64/bin/configManta.py \ | |||
| --normalBam ${normal_bam} \ | |||
| --tumorBam ${tumour_bam} \ | |||
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