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tasks/manta.wdl
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| String out_dir = "${sample_id}_result" | String out_dir = "${sample_id}_result" | ||||
| command <<< | command <<< | ||||
| set -exo pipefail | set -exo pipefail | ||||
| cpu=$(nproc) | |||||
| /home/biosoft/manta-1.6.0.centos6_x86_64/bin/configManta.py \ | /home/biosoft/manta-1.6.0.centos6_x86_64/bin/configManta.py \ | ||||
| --normalBam ${normal_bam} \ | --normalBam ${normal_bam} \ | ||||
| --tumorBam ${tumour_bam} \ | --tumorBam ${tumour_bam} \ |
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