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workflow.wdl
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| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | ||||
| tumor_name = sample_id+'_T', | tumor_name = sample_id+'_T', | ||||
| normal_name = sample_id+'_N', | normal_name = sample_id+'_N', | ||||
| tumor_recall_data = Sentieon_BQSR_normal.recaled_bam, | |||||
| normal_recall_data = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | |||||
| normal_recall_data = Sentieon_BQSR_normal.recal_table, | |||||
| ref_dir = ref_fasta_dir, | ref_dir = ref_fasta_dir, | ||||
| ref_fasta = ref_fasta, | ref_fasta = ref_fasta, |
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