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workflow.wdl
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| @@ -174,8 +174,8 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{ | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| tumor_name = sample_id+'_T', | |||
| normal_name = sample_id+'_N', | |||
| tumor_recall_data = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_recall_data = Sentieon_BQSR_normal.recaled_bam_index, | |||
| tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | |||
| normal_recall_data = Sentieon_BQSR_normal.recal_table, | |||
| ref_dir = ref_fasta_dir, | |||
| ref_fasta = ref_fasta, | |||
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