更新 'workflow.wdl'

workflow.wdl

@@ -188,7 +188,7 @@ call TNseq.sentieon_TNseq as sentieon_TNseq{
 		tumor_bam = Sentieon_BQSR_tumor.recaled_bam,
 		tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index,
 		normal_bam = Sentieon_BQSR_normal.recaled_bam,
-		normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai,
+		normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index,
 		tumor_name = sample_id+'_T',
 		normal_name = sample_id+'_N',
 
@@ -209,7 +209,7 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{
 		tumor_bam = Sentieon_BQSR_tumor.recaled_bam,
 		tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index,
 		normal_bam = Sentieon_BQSR_normal.recaled_bam,
-		normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai,
+		normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index,
 		tumor_name = sample_id+'_T',
 		normal_name = sample_id+'_N',
 		tumor_recall_data = Sentieon_BQSR_normal.recaled_bam,
@@ -233,7 +233,7 @@ call manta_calling.manta_calling as manta_calling{
 		tumor_bam = Sentieon_BQSR_tumor.recaled_bam,
 		tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index,
 		normal_bam = Sentieon_BQSR_normal.recaled_bam,
-		normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai,
+		normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index,
 		ref_fasta = ref_fasta,
 		ref_dir = ref_fasta_dir,
 		sample_id = sample_id,
@@ -248,7 +248,7 @@ call strelka_calling.strelka_calling as strelka_calling{
 		tumor_bam = Sentieon_BQSR_tumor.recaled_bam,
 		tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index,
 		normal_bam = Sentieon_BQSR_normal.recaled_bam,
-		normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai,
+		normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index,
 		ref_fasta = ref_fasta,
 		ref_dir = ref_fasta_dir,
 		sample_id = sample_id,