共有 1 个文件被更改，包括 4 次插入 和 4 次删除
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workflow.wdl
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| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | ||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | ||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | normal_bam = Sentieon_BQSR_normal.recaled_bam, | ||||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| tumor_name = sample_id+'_T', | tumor_name = sample_id+'_T', | ||||
| normal_name = sample_id+'_N', | normal_name = sample_id+'_N', | ||||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | ||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | ||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | normal_bam = Sentieon_BQSR_normal.recaled_bam, | ||||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| tumor_name = sample_id+'_T', | tumor_name = sample_id+'_T', | ||||
| normal_name = sample_id+'_N', | normal_name = sample_id+'_N', | ||||
| tumor_recall_data = Sentieon_BQSR_normal.recaled_bam, | tumor_recall_data = Sentieon_BQSR_normal.recaled_bam, | ||||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | ||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | ||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | normal_bam = Sentieon_BQSR_normal.recaled_bam, | ||||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| ref_fasta = ref_fasta, | ref_fasta = ref_fasta, | ||||
| ref_dir = ref_fasta_dir, | ref_dir = ref_fasta_dir, | ||||
| sample_id = sample_id, | sample_id = sample_id, | ||||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | ||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | ||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | normal_bam = Sentieon_BQSR_normal.recaled_bam, | ||||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| ref_fasta = ref_fasta, | ref_fasta = ref_fasta, | ||||
| ref_dir = ref_fasta_dir, | ref_dir = ref_fasta_dir, | ||||
| sample_id = sample_id, | sample_id = sample_id, |
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