1 ha cambiato i file con 4 aggiunte e 4 eliminazioni
+ 4
- 4
workflow.wdl
Vedi File
| @@ -188,7 +188,7 @@ call TNseq.sentieon_TNseq as sentieon_TNseq{ | |||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| tumor_name = sample_id+'_T', | |||
| normal_name = sample_id+'_N', | |||
| @@ -209,7 +209,7 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{ | |||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| tumor_name = sample_id+'_T', | |||
| normal_name = sample_id+'_N', | |||
| tumor_recall_data = Sentieon_BQSR_normal.recaled_bam, | |||
| @@ -233,7 +233,7 @@ call manta_calling.manta_calling as manta_calling{ | |||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| ref_fasta = ref_fasta, | |||
| ref_dir = ref_fasta_dir, | |||
| sample_id = sample_id, | |||
| @@ -248,7 +248,7 @@ call strelka_calling.strelka_calling as strelka_calling{ | |||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_bam_bai = Sentieon_BQSR_normal.normal_bam_bai, | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| ref_fasta = ref_fasta, | |||
| ref_dir = ref_fasta_dir, | |||
| sample_id = sample_id, | |||
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