ref_fasta=ref_fasta, | ref_fasta=ref_fasta, | ||||
dbsnp=dbsnp, | dbsnp=dbsnp, | ||||
db_mills=db_mills, | db_mills=db_mills, | ||||
deduped_bam=SentieonFastqToBam_normal.deduped_bam, | |||||
deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, | |||||
deduped_bam=SentieonFastqToBam_tumor.deduped_bam, | |||||
deduped_bam_index=SentieonFastqToBam_tumor.deduped_bam_bai, | |||||
docker=docker_sentieon, | docker=docker_sentieon, | ||||
cluster_config=cluster_config, | cluster_config=cluster_config, | ||||
disk_size=disk_size, | disk_size=disk_size, |