@@ -29,14 +29,14 @@ task sentieon_TNseq{ | |||
if [${regions}]; then | |||
INTERVAL="--interval ${regions} --interval_padding ${interval_padding}" | |||
else: | |||
else | |||
INTERVAL="" | |||
fi | |||
if [${normal_bam}];then | |||
INPUT="-i ${tumor_bam} -i ${normal_bam}" | |||
SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}" | |||
else: | |||
else | |||
INPUT="-i ${tumor_bam}" | |||
SAMPLE="--tumor_sample ${tumor_name}" | |||
fi |