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@@ -3,8 +3,8 @@ import "./tasks/bcftools_concat.wdl" as bcftools_concat |
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import "./tasks/annovar.wdl" as annovar |
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workflow {{ project_name }} { |
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File tumour_bam |
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File tumour_bam_bai |
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File tumor_bam |
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File tumor_bam_bai |
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File normal_bam |
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File normal_bam_bai |
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String ref_fasta |
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@@ -23,8 +23,8 @@ workflow {{ project_name }} { |
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call stralka.strelka_calling as stralka{ |
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input: |
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tumour_bam=tumour_bam, |
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tumour_bam_bai=tumour_bam_bai, |
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tumor_bam=tumor_bam, |
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tumor_bam_bai=tumor_bam_bai, |
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normal_bam=normal_bam, |
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normal_bam_bai=normal_bam_bai, |
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ref_fasta=ref_fasta, |