1 changed files with 4 additions and 4 deletions
+ 4
- 4
workflow.wdl
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| import "./tasks/annovar.wdl" as annovar | import "./tasks/annovar.wdl" as annovar | ||||
| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| File tumour_bam | |||||
| File tumour_bam_bai | |||||
| File tumor_bam | |||||
| File tumor_bam_bai | |||||
| File normal_bam | File normal_bam | ||||
| File normal_bam_bai | File normal_bam_bai | ||||
| String ref_fasta | String ref_fasta | ||||
| call stralka.strelka_calling as stralka{ | call stralka.strelka_calling as stralka{ | ||||
| input: | input: | ||||
| tumour_bam=tumour_bam, | |||||
| tumour_bam_bai=tumour_bam_bai, | |||||
| tumor_bam=tumor_bam, | |||||
| tumor_bam_bai=tumor_bam_bai, | |||||
| normal_bam=normal_bam, | normal_bam=normal_bam, | ||||
| normal_bam_bai=normal_bam_bai, | normal_bam_bai=normal_bam_bai, | ||||
| ref_fasta=ref_fasta, | ref_fasta=ref_fasta, |
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