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String docker_bcftools |
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String docker_bcftools |
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String docker_annovar |
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String docker_annovar |
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String docker_tmb |
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String docker_tmb |
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String docker_tmb_MSIsensor |
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String docker_MSIsensor |
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#config |
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#config |
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String cluster_config |
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String cluster_config |
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tumor_bam=Sentieon_BQSR_tumor.recaled_bam, |
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tumor_bam=Sentieon_BQSR_tumor.recaled_bam, |
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tumor_bam_index=Sentieon_BQSR_tumor.recaled_bam_index, |
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tumor_bam_index=Sentieon_BQSR_tumor.recaled_bam_index, |
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baseline=baseline, |
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baseline=baseline, |
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docker=docker_msisensor, |
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docker=docker_MSIsensor, |
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cluster_config=cluster_config, |
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cluster_config=cluster_config, |
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disk_size=disk_size |
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disk_size=disk_size |
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} |
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} |