1 changed files with 4 additions and 4 deletions
+ 4
- 4
workflow.wdl
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| @@ -97,8 +97,8 @@ call TNseq.sentieon_TNseq as sentieon_TNseq{ | |||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||
| tumor_name = sample_id+'_T', | |||
| normal_name = sample_id+'_N', | |||
| tumor_name = sample_id+'_T_1', | |||
| normal_name = sample_id+'_N_1', | |||
| ref_dir = ref_fasta_dir, | |||
| ref_fasta = ref_fasta, | |||
| @@ -128,8 +128,8 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{ | |||
| tumor_bam_bai = tumor_deduped_bam_bai, | |||
| normal_bam = normal_deduped_bam, | |||
| normal_bam_bai = normal_deduped_bam_bai, | |||
| tumor_name = sample_id+'_T', | |||
| normal_name = sample_id+'_N', | |||
| tumor_name = sample_id+'_T_1', | |||
| normal_name = sample_id+'_N_1', | |||
| tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | |||
| normal_recall_data = Sentieon_BQSR_normal.recal_table, | |||
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