1 changed files with 4 additions and 4 deletions
+ 4
- 4
workflow.wdl
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| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | ||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | normal_bam = Sentieon_BQSR_normal.recaled_bam, | ||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | ||||
| tumor_name = sample_id+'_T', | |||||
| normal_name = sample_id+'_N', | |||||
| tumor_name = sample_id+'_T_1', | |||||
| normal_name = sample_id+'_N_1', | |||||
| ref_dir = ref_fasta_dir, | ref_dir = ref_fasta_dir, | ||||
| ref_fasta = ref_fasta, | ref_fasta = ref_fasta, | ||||
| tumor_bam_bai = tumor_deduped_bam_bai, | tumor_bam_bai = tumor_deduped_bam_bai, | ||||
| normal_bam = normal_deduped_bam, | normal_bam = normal_deduped_bam, | ||||
| normal_bam_bai = normal_deduped_bam_bai, | normal_bam_bai = normal_deduped_bam_bai, | ||||
| tumor_name = sample_id+'_T', | |||||
| normal_name = sample_id+'_N', | |||||
| tumor_name = sample_id+'_T_1', | |||||
| normal_name = sample_id+'_N_1', | |||||
| tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | ||||
| normal_recall_data = Sentieon_BQSR_normal.recal_table, | normal_recall_data = Sentieon_BQSR_normal.recal_table, | ||||
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