meng 2 лет назад
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89eefc83cc
1 измененных файлов: 4 добавлений и 4 удалений
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    -4
      workflow.wdl

+ 4
- 4
workflow.wdl Просмотреть файл

@@ -97,8 +97,8 @@ call TNseq.sentieon_TNseq as sentieon_TNseq{
tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index,
normal_bam = Sentieon_BQSR_normal.recaled_bam,
normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index,
tumor_name = sample_id+'_T',
normal_name = sample_id+'_N',
tumor_name = sample_id+'_T_1',
normal_name = sample_id+'_N_1',

ref_dir = ref_fasta_dir,
ref_fasta = ref_fasta,
@@ -128,8 +128,8 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{
tumor_bam_bai = tumor_deduped_bam_bai,
normal_bam = normal_deduped_bam,
normal_bam_bai = normal_deduped_bam_bai,
tumor_name = sample_id+'_T',
normal_name = sample_id+'_N',
tumor_name = sample_id+'_T_1',
normal_name = sample_id+'_N_1',
tumor_recall_data = Sentieon_BQSR_tumor.recal_table,
normal_recall_data = Sentieon_BQSR_normal.recal_table,


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