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更新 'tasks/strelka.wdl'

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meng 2 years ago
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File normal_bam_bai File normal_bam_bai
String ref_fasta String ref_fasta
File ref_dir File ref_dir
String ref_bed
String sample_id String sample_id
File? manta_indel_vcf File? manta_indel_vcf
File? manta_indel_vcf_index File? manta_indel_vcf_index
--normalBam ${normal_bam} \ --normalBam ${normal_bam} \
--tumorBam ${tumor_bam} \ --tumorBam ${tumor_bam} \
--referenceFasta ${ref_dir}/${ref_fasta} \ --referenceFasta ${ref_dir}/${ref_fasta} \
--callRegions ${ref_dir}/${ref_bed} \
--runDir ${out_dir} --runDir ${out_dir}
ls ${out_dir} ls ${out_dir}

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