@@ -31,10 +31,11 @@ task sentieon_TNscope{ | |||
-i ${tumor_bam} -q ${tumor_recall_data} \ | |||
-i ${normal_bam} -q ${normal_recall_data} \ | |||
--algo TNscope --tumor_sample ${tumor_name} --normal_sample ${normal_name} \ | |||
--disable_detector sv --trim_soft_clip \ | |||
--trim_soft_clip \ | |||
--dbsnp ${dbsnp_dir}/${dbsnp} ${sample_id}.TNscope.vcf || { echo "TNscope failed"; exit 1; } | |||
ls ./ | |||
#--disable_detector sv | |||
>>> | |||