@@ -31,14 +31,14 @@ task sentieon_TNseq{ | |||
if [[ -z "$REGION" ]]; then | |||
INTERVAL="--interval ${regions} --interval_padding ${interval_padding}" | |||
else: | |||
else | |||
INTERVAL="" | |||
fi | |||
if [[ -z "$NORMAL" ]];then | |||
INPUT="-i ${tumor_bam} -i ${normal_bam}" | |||
SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}" | |||
else: | |||
else | |||
INPUT="-i ${tumor_bam}" | |||
SAMPLE="--tumor_sample ${tumor_name}" | |||
fi |