更新 'tasks/TNseq.wdl'

tasks/TNseq.wdl

@@ -26,14 +26,16 @@ task sentieon_TNseq{
         set -exo
         export SENTIEON_LICENSE=${SENTIEON_LICENSE}
         nt=$(nproc)
+        REGION=${regions}
+        NORMAL=${normal_bam}
 
-        if [-z ${regions} ]; then
+        if [[ -z "$REGION" ]]; then
             INTERVAL="--interval ${regions} --interval_padding ${interval_padding}"
         else:
             INTERVAL=""
         fi
 
-        if [-z ${normal_bam}];then
+        if [[ -z "$NORMAL" ]];then
             INPUT="-i ${tumor_bam} -i ${normal_bam}"
             SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}"
         else: