1 muutettua tiedostoa jossa 2 lisäystä ja 1 poistoa
+ 2
- 1
tasks/TNscope.wdl
Näytä tiedosto
| -i ${tumor_bam} -q ${tumor_recall_data} \ | -i ${tumor_bam} -q ${tumor_recall_data} \ | ||||
| -i ${normal_bam} -q ${normal_recall_data} \ | -i ${normal_bam} -q ${normal_recall_data} \ | ||||
| --algo TNscope --tumor_sample ${tumor_name} --normal_sample ${normal_name} \ | --algo TNscope --tumor_sample ${tumor_name} --normal_sample ${normal_name} \ | ||||
| --disable_detector sv --trim_soft_clip \ | |||||
| --trim_soft_clip \ | |||||
| --dbsnp ${dbsnp_dir}/${dbsnp} ${sample_id}.TNscope.vcf || { echo "TNscope failed"; exit 1; } | --dbsnp ${dbsnp_dir}/${dbsnp} ${sample_id}.TNscope.vcf || { echo "TNscope failed"; exit 1; } | ||||
| # --disable_detector sv | |||||
| ls ./ | ls ./ | ||||
| >>> | >>> |
Loading…