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{ |
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"Seq_platform":"Illumina", |
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"ref_fasta":"GRCh38.d1.vd1.fa", |
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"ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
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"docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1", |
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"docker_sentieon":"registry-vpc.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05", |
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"docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0", |
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"docker_manta":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/manta:v1.6.0", |
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"docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10", |
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"SENTIEON_LICENSE":"172.25.2.5:8990", |
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"cluster_config":"OnDemand ecs.r6.xlarge img-ubuntu-vpc", |
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"disk_size":"600", |
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"fastqc":false, |
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"annot_gff":"oss://hcc1395/reference_genome/gencode.v36.annotation.gff", |
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"dbsnp_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
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"dbmills_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
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"dbsnp":"dbsnp_146.hg38.vcf", |
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"db_mills":"Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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"regions":"oss://ivd-product/reference/bed/Dynegene/SureSelectXT_HS_V8_S33266340_hg38_Regions.bed", |
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"interval_padding":"100", |
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"bamqc":false, |
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"germline_resource":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz", |
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"germline_resource_tbi":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz.tbi" |
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} |