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更新 'tasks/TNscope.wdl'

master
meng 2 years ago
parent
commit
b8ad83311e
1 changed files with 2 additions and 1 deletions
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    -1
      tasks/TNscope.wdl

+ 2
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tasks/TNscope.wdl View File

@@ -31,9 +31,10 @@ task sentieon_TNscope{
-i ${tumor_bam} -q ${tumor_recall_data} \
-i ${normal_bam} -q ${normal_recall_data} \
--algo TNscope --tumor_sample ${tumor_name} --normal_sample ${normal_name} \
--disable_detector sv --trim_soft_clip \
--trim_soft_clip \
--dbsnp ${dbsnp_dir}/${dbsnp} ${sample_id}.TNscope.vcf || { echo "TNscope failed"; exit 1; }
# --disable_detector sv
ls ./

>>>

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