更新 'workflow.wdl'

workflow.wdl

@@ -6,13 +6,11 @@ workflow {{ project_name }} {
     File tumor_bam_bai
     File? normal_bam
     File? normal_bam_bai
-    String tumor_name
-    String normal_name
     File tumor_recall_data
     File normal_recall_data
 
-    File ref_dir
-    String ref_fasta
+    File ref_fasta
+    String ref_fasta_dir
     File dbsnp_dir
     String dbsnp
 
@@ -33,8 +31,8 @@ workflow {{ project_name }} {
             normal_name=sample_id+'_N',
             tumor_recall_data=tumor_recall_data,
             normal_recall_data=normal_recall_data,
-            ref_dir=ref_dir,
-            ref_fasta=ref_fasta,
+            ref_dir=ref_fasta,
+            ref_fasta=ref_fasta_dir,
             dbsnp_dir=dbsnp_dir,
             dbsnp=dbsnp,
             docker=docker_sentieon,