1 fichiers modifiés avec 4 ajouts et 6 suppressions
+ 4
- 6
workflow.wdl
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| File tumor_bam_bai | File tumor_bam_bai | ||||
| File? normal_bam | File? normal_bam | ||||
| File? normal_bam_bai | File? normal_bam_bai | ||||
| String tumor_name | |||||
| String normal_name | |||||
| File tumor_recall_data | File tumor_recall_data | ||||
| File normal_recall_data | File normal_recall_data | ||||
| File ref_dir | |||||
| String ref_fasta | |||||
| File ref_fasta | |||||
| String ref_fasta_dir | |||||
| File dbsnp_dir | File dbsnp_dir | ||||
| String dbsnp | String dbsnp | ||||
| normal_name=sample_id+'_N', | normal_name=sample_id+'_N', | ||||
| tumor_recall_data=tumor_recall_data, | tumor_recall_data=tumor_recall_data, | ||||
| normal_recall_data=normal_recall_data, | normal_recall_data=normal_recall_data, | ||||
| ref_dir=ref_dir, | |||||
| ref_fasta=ref_fasta, | |||||
| ref_dir=ref_fasta, | |||||
| ref_fasta=ref_fasta_dir, | |||||
| dbsnp_dir=dbsnp_dir, | dbsnp_dir=dbsnp_dir, | ||||
| dbsnp=dbsnp, | dbsnp=dbsnp, | ||||
| docker=docker_sentieon, | docker=docker_sentieon, |
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