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更新 'workflow.wdl'

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meng 2 年前
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workflow.wdl 查看文件

String disk_size String disk_size
String docker_annotsv String docker_annotsv


call manta_calling.manta_calling as manta_calling{
call manta_calling.manta_calling as manta_calling_SV{
input: input:
tumor_bam = tumor_bam, tumor_bam = tumor_bam,
tumor_bam_bai = tumor_bam_bai, tumor_bam_bai = tumor_bam_bai,
call AnnotSV.AnnotSV as manta_AnnotSV{ call AnnotSV.AnnotSV as manta_AnnotSV{
input: input:
sample=sample_id, sample=sample_id,
somatic_vcf= manta_calling.manta_indel_vcf,
somatic_vcf= manta_calling_SV.manta_indel_vcf,
annotsv_database=annotsv_database, annotsv_database=annotsv_database,
docker=docker_annotsv, docker=docker_annotsv,
cluster_config=cluster_config, cluster_config=cluster_config,

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