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String disk_size |
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String disk_size |
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String docker_annotsv |
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String docker_annotsv |
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call manta_calling.manta_calling as manta_calling{ |
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call manta_calling.manta_calling as manta_calling_SV{ |
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input: |
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input: |
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tumor_bam = tumor_bam, |
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tumor_bam = tumor_bam, |
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tumor_bam_bai = tumor_bam_bai, |
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tumor_bam_bai = tumor_bam_bai, |
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call AnnotSV.AnnotSV as manta_AnnotSV{ |
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call AnnotSV.AnnotSV as manta_AnnotSV{ |
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input: |
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input: |
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sample=sample_id, |
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sample=sample_id, |
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somatic_vcf= manta_calling.manta_indel_vcf, |
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somatic_vcf= manta_calling_SV.manta_indel_vcf, |
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annotsv_database=annotsv_database, |
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annotsv_database=annotsv_database, |
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docker=docker_annotsv, |
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docker=docker_annotsv, |
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cluster_config=cluster_config, |
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cluster_config=cluster_config, |