1 gewijzigde bestanden met toevoegingen van 2 en 2 verwijderingen
+ 2
- 2
workflow.wdl
Bestand weergeven
| @@ -18,7 +18,7 @@ workflow {{ project_name }} { | |||
| String disk_size | |||
| String docker_annotsv | |||
| call manta_calling.manta_calling as manta_calling{ | |||
| call manta_calling.manta_calling as manta_calling_SV{ | |||
| input: | |||
| tumor_bam = tumor_bam, | |||
| tumor_bam_bai = tumor_bam_bai, | |||
| @@ -36,7 +36,7 @@ workflow {{ project_name }} { | |||
| call AnnotSV.AnnotSV as manta_AnnotSV{ | |||
| input: | |||
| sample=sample_id, | |||
| somatic_vcf= manta_calling.manta_indel_vcf, | |||
| somatic_vcf= manta_calling_SV.manta_indel_vcf, | |||
| annotsv_database=annotsv_database, | |||
| docker=docker_annotsv, | |||
| cluster_config=cluster_config, | |||
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